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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18377159_18378323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18377159 - 18378323
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTAATTTCATG
Flanking Amino Acid:
KQSEKEKYALDRQVQSMQLK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
45.7
-0.4
2
53.54
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797