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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18382078_18393827_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18382078 - 18393827
Intron Length:
11750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTACATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTTACTTACAT
Flanking Amino Acid:
ENGRLLANNVITCVAPEQQA
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
62
0.3
1
62.3
30.4
Major PPT
69.9
0.45
0.9
67.7
38
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
63.9
0.52
1.9
86.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797