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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18393926_18394015_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18393926 - 18394015
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGCC
5'SS Class:
major
3'SS Sequence:
TCTTCTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTCTTTTAATA
Flanking Amino Acid:
KKGQGRQTTARKEAEQCNKI
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.4
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.6
0.64
0.7
77.8
29.3
Minor 5ss
30.4
-2.2
3.5
42.6
44.5
Minor BPS
67.7
0.55
1.2
71.66
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797