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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18394076_18398945_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18394076 - 18398945
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTAGTAT
5'SS Class:
major
3'SS Sequence:
TAAATCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATGTTAAAT
Flanking Amino Acid:
WKKKCQTLQNSLHAIKDEMF
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
62.8
37.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.9
73.9
40.9
Minor 5ss
40.2
-1.1
3.2
55.8
48.5
Minor BPS
50
0.08
2.2
73.28
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797