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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18399034_18400164_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18399034 - 18400164
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATGTTACTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TGTTACTTACAG
Flanking Amino Acid:
ALKCTSFGETMVCPVCVEND
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
70
0.5
1
67
39.8
Major PPT
77.5
0.62
0.9
70.2
39.9
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
51.2
-0.1
2
62.73
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797