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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18400246_18401811_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18400246 - 18401811
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATCCTTAATA
Flanking Amino Acid:
KAGLCLPSTLSPVYSQSIKE
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.3
38.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.9
0.78
0.7
78.2
36
Minor 5ss
41.3
-1
2.5
47.3
42.8
Minor BPS
81.2
0.98
1.1
80.12
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797