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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18401910_18402458_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
18401910 - 18402458
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTACAATAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.3
0.77
0.8
79.5
32.2
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
49.3
0.03
1.9
69.57
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797