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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18533869_18534645_F

Intron Information:

Intron Rank:
126349
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18533869 - 18534645
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTCCGTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATAACCAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.2
59.3
40.2
Major BPS
71.4
0.53
1
67
39.8
Major PPT
87.6
0.85
0.7
85.2
28.1
Minor 5ss
47.1
-0.3
3.1
66.9
44.7
Minor BPS
50.9
0.11
2
73.5
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018074
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027238
18533673 - 18534816
1144
ENSAPLT00000024168
18533673 - 18537614
3942