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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18534707_18536603_F

Intron Information:

Intron Rank:
126350
Intron Class:
major
Intron Phase:
Intron Coordinates:
18534707 - 18536603
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACACATTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
65
0.34
0.9
57.3
37.5
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
62.9
0.39
1.6
75.4
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018074
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030443
18534544 - 18537196
2653
ENSAPLT00000024168
18533673 - 18537614
3942