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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18536629_18537148_F

Intron Information:

Intron Rank:
126351
Intron Class:
minor
Intron Phase:
Intron Coordinates:
18536629 - 18537148
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
AAGTTGTGGACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTTTCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
55.1
0.12
1.2
49.9
47.3
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
69.5
0.61
1.7
79.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018074
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024168
18533673 - 18537614
3942