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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18555362_18555824_F

Intron Information:

Intron Rank:
130797
Intron Class:
major
Intron Phase:
Intron Coordinates:
18555362 - 18555824
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGGAATATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
79
0.72
1
78.4
31.2
Major PPT
73
0.52
1
66
44.2
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
46.9
-0.1
1.8
63.42
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019917
18555015 - 18559419
4405