Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18555908_18556252_F

Intron Information:

Intron Rank:

130798

Intron Class:

major

Intron Phase:

Intron Coordinates:

18555908 - 18556252

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGAGA

5'SS Class:

major

3'SS Sequence:

TGTTTTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

TTTGTTTCAAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

66.1

41.1

Major BPS

0.57

1.2

77.7

37.1

Major PPT

79.1

0.66

73.5

41.8

Minor 5ss

26.7

-2.7

31.3

42.6

Minor BPS

49.3

-0

1.9

65.33

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031676

18552602 - 18556356

3755

ENSAPLT00000019917

18555015 - 18559419

4405