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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18606_19044_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18606 - 19044
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAATTTTATTT
Flanking Amino Acid:
LYGPDNHLVEWHRTPTTQET
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.4
0.73
0.9
80.4
31.6
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
55.9
0.26
1.6
72.7
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008538
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020394
3263 - 88619
85357
ENSAPLT00000019825
3263 - 59790
56528
ENSAPLT00000018278
3263 - 59790
56528
ENSAPLT00000008903
3822 - 61680
57859
ENSAPLT00000046030
3263 - 59790
56528