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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18625668_18626696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18625668 - 18626696
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGGTTTTGTATT
Flanking Amino Acid:
KIKVDNHLFNKENMPSHFKF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.2
0.77
0.8
81.3
36.2
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
47.4
-0.1
1.7
64.4
40.9

Associated Gene:

Gene:
PIP4K2A
Ensembl Gene ID:
ENSAPLG00000004521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004674
18569372 - 18673428
104057