Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18626794_18643455_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18626794 - 18643455

Intron Length:

16662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

AATCAATTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTAATC

Flanking Amino Acid:

RFGIDDQDFQNSLTRSAPLA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

23.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

61.3

0.26

1.1

54.6

43.9

Minor 5ss

40.5

-1.1

2.7

50.7

45.7

Minor BPS

75.8

0.79

1.1

78.23

31.1

Associated Gene:

Gene:

PIP4K2A

Ensembl Gene ID:

ENSAPLG00000004521

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004674

18569372 - 18673428

104057