Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1863526_1882619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1863526 - 1882619

Intron Length:

19094

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGAACT

5'SS Class:

strong_major

3'SS Sequence:

AATGGCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCAAAT

U12 Branch Point Sequence:

TCTCCCCCAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

79.9

32.9

Major BPS

52.4

0.06

1.1

58.8

34.5

Major PPT

63.8

0.31

55.8

40.3

Minor 5ss

42.2

-0.9

2.8

58.8

45.4

Minor BPS

0.01

72.33

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046965

1842816 - 1882673

39858