About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18643609_18654852_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18643609 - 18654852
Intron Length:
11244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
MHNILKKYHQFIVECHGNTL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.8
81.2
30.8
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
PIP4K2A
Ensembl Gene ID:
ENSAPLG00000004521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004674
18569372 - 18673428
104057