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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18655000_18657479_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18655000 - 18657479
Intron Length:
2480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATTTTTAGATCC
Flanking Amino Acid:
LSVYRKYDLKGSTVAREASD
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
79.2
0.72
1
75
40
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
46
-0.3
1.9
62.1
37.2

Associated Gene:

Gene:
PIP4K2A
Ensembl Gene ID:
ENSAPLG00000004521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004674
18569372 - 18673428
104057