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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18667088_18670396_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18667088 - 18670396
Intron Length:
3309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TATCACTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTGATAAATT
Flanking Amino Acid:
FLEKLKKDVEFLAQLKLMDY
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
70.7
0.47
0.9
62.4
39.1
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
48.5
-0
2.3
74.1
42.9

Associated Gene:

Gene:
PIP4K2A
Ensembl Gene ID:
ENSAPLG00000004521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004674
18569372 - 18673428
104057