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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18670641_18671407_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18670641 - 18671407
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCATTCTTACTG
Flanking Amino Acid:
IDVYGIKSHENAPRKEIYFM
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.5
40.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.5
0.73
0.8
76.8
31.7
Minor 5ss
42.8
-0.8
2.9
58
40.6
Minor BPS
56.4
0.06
1.7
59.08
43.4

Associated Gene:

Gene:
PIP4K2A
Ensembl Gene ID:
ENSAPLG00000004521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004674
18569372 - 18673428
104057