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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18702114_18707466_R

Intron Information:

Intron Rank:
130041
Intron Class:
major
Intron Phase:
Intron Coordinates:
18702114 - 18707466
Intron Length:
5353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTCCATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
85
26
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
87.2
0.84
0.7
81.4
29.1
Minor 5ss
32
-2.1
2.8
42.1
44.6
Minor BPS
68.5
0.58
1.9
84.96
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017171
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028074
18701386 - 18708700
7315