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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18728273_18730442_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18728273 - 18730442
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TAATGCACAAAC
Flanking Amino Acid:
INNCFPEEIVRYYSPGYSEI
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
42.8
-0.5
2.2
55.64
41.6

Associated Gene:

Gene:
SPAG6
Ensembl Gene ID:
ENSAPLG00000013595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014191
18727622 - 18752809
25188