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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18730589_18733300_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18730589 - 18733300
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGTACT
Flanking Amino Acid:
MKHIVGQFSKVLPHDSKARR
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.9
73.1
37.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
53
0.17
2.1
81.89
39

Associated Gene:

Gene:
SPAG6
Ensembl Gene ID:
ENSAPLG00000013595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014191
18727622 - 18752809
25188