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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18733418_18734434_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18733418 - 18734434
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTAATTTTATTT
Flanking Amino Acid:
THSSEDLQLKTKRALKNILQ
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1.1
87.1
27.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.5
0.37
0.9
62.4
38.5
Minor 5ss
30.7
-2.2
3.9
42.6
38.4
Minor BPS
50.1
0.08
1.6
65.6
39.4

Associated Gene:

Gene:
SPAG6
Ensembl Gene ID:
ENSAPLG00000013595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014191
18727622 - 18752809
25188