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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18734627_18737419_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18734627 - 18737419
Intron Length:
2793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCTAT
5'SS Class:
major
3'SS Sequence:
GTTAATGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGGTTAATG
Flanking Amino Acid:
NLSMAVIVSKGIPPLCTCLV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
76.1
35.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
69.9
0.45
1
61.5
44.2
Minor 5ss
41.9
-0.9
2.9
56.2
48
Minor BPS
54
-0
2.5
70.75
43.1

Associated Gene:

Gene:
SPAG6
Ensembl Gene ID:
ENSAPLG00000013595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014191
18727622 - 18752809
25188