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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18748185_18752452_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18748185 - 18752452
Intron Length:
4268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGCAT
5'SS Class:
major
3'SS Sequence:
CTTATTTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
QLVCSLSEQNRFYKKAAAFV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
39.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.4
0.59
0.9
72.3
37.8
Minor 5ss
34.8
-1.7
3.5
52
44.9
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
SPAG6
Ensembl Gene ID:
ENSAPLG00000013595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014191
18727622 - 18752809
25188