Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18752620_18752727_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

18752620 - 18752727

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAATTTAA

5'SS Class:

major

3'SS Sequence:

TGTTGTAACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

CCTGTTGTAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.4

1.1

66.8

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

69.7

0.44

67.1

42.9

Minor 5ss

40.9

-1

2.8

45.7

43.6

Minor BPS

-0

2.1

65.89

45.8

Associated Gene:

Gene:

SPAG6

Ensembl Gene ID:

ENSAPLG00000013595

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014191

18727622 - 18752809

25188