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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18765062_18765605_F

Intron Information:

Intron Rank:
125886
Intron Class:
major
Intron Phase:
Intron Coordinates:
18765062 - 18765605
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGGAG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AGCTCCTCATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
62.4
37.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
22.5
-3.2
3.3
27.7
44.2
Minor BPS
45.2
-0.3
2
53.67
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041440
18764147 - 18765970
1824