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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18769098_18769190_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18769098 - 18769190
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATTAGC
5'SS Class:
major
3'SS Sequence:
CTTTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TTCTCTTTGCCT
Flanking Amino Acid:
DIAYIYTWRRNGPLPLKYRV
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69
42.1
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
83.5
0.75
0.8
77.1
31.6
Minor 5ss
35.7
-1.6
2.7
37.7
40
Minor BPS
48.5
-0
3.5
82.51
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022525
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017662
18767461 - 18772505
5045