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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18770854_18770985_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18770854 - 18770985
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGCTTTTCCACC
Flanking Amino Acid:
VYKLVPGLFKNEMKRRRDFY
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
73.2
0.52
0.8
66.7
34.6
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
46.8
-0.2
1.9
58.24
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022525
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017662
18767461 - 18772505
5045