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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18771042_18771825_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18771042 - 18771825
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAATTTTATGG
Flanking Amino Acid:
VHKTRPLLNIRSDKTLQDIV
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
45.7
-0.4
1.9
51.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022525
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017662
18767461 - 18772505
5045