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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18771923_18772283_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18771923 - 18772283
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTTGCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAA
U12 Branch Point Sequence:
TCTGGCTAAAAG
Flanking Amino Acid:
ATTIIECLHSFCKTCIVRYL
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
65.2
40.8
Major BPS
52.4
0.06
1.3
55.6
40.2
Major PPT
80.8
0.69
0.9
73.7
36.9
Minor 5ss
32.6
-2
2.7
37.6
40
Minor BPS
44.1
-0.5
2.2
51.73
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022525
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017662
18767461 - 18772505
5045