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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18831029_18831419_F

Intron Information:

Intron Rank:
144556
Intron Class:
major
Intron Phase:
Intron Coordinates:
18831029 - 18831419
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGT
5'SS Class:
major
3'SS Sequence:
TTTTCCCGGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
42.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
68.1
0.41
1
65.8
36.1
Minor 5ss
38.7
-1.3
3.4
55.4
48.8
Minor BPS
60.7
0.41
2
78.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017735
18829881 - 18831649
1769