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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18831513_18835397_R

Intron Information:

Intron Rank:
144215
Intron Class:
major
Intron Phase:
Intron Coordinates:
18831513 - 18835397
Intron Length:
3885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
TTTCCTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
GTTTCCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
63.1
43.4
Major BPS
69.1
0.48
1
70
32.1
Major PPT
73
0.52
0.8
66.7
34.5
Minor 5ss
28.7
-2.4
2.7
27.4
36.3
Minor BPS
65.9
0.58
1.9
85.32
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024853
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040917
18830219 - 18835552
5334