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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18900277_18901240_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18900277 - 18901240
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
DENAETQFRQLVAIYEILKD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.4
0.73
0.9
81.2
36.5
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
DNAJC1
Ensembl Gene ID:
ENSAPLG00000016264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045984
18864658 - 18964348
99691
ENSAPLT00000016977
18864658 - 18964348
99691