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Intron Name: Anas_platyrhynchos_platyrhynchos_2_18951325_18962182_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18951325 - 18962182

Intron Length:

10858

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

ATTTTTGTAAGA

Flanking Amino Acid:

AHELGRSVADVTMKAKQLKD

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.8

28.9

Major BPS

71.2

0.53

70.3

31.9

Major PPT

89.3

0.88

0.6

22.7

Minor 5ss

37.5

-1.4

2.8

46.1

42.2

Minor BPS

49.4

-0

2.2

68.42

38.7

Associated Gene:

Gene:

DNAJC1

Ensembl Gene ID:

ENSAPLG00000016264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045984

18864658 - 18964348

99691

ENSAPLT00000016977

18864658 - 18964348

99691