Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18962232_18962740_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18962232 - 18962740

Intron Length:

509

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GGTACCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTAAT

U12 Branch Point Sequence:

GGTACCTCAACA

Flanking Amino Acid:

QLKDSVTYTPGVIRLSELKT

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

32.7

Major BPS

66.7

0.41

1.4

69.7

44.2

Major PPT

62.3

0.28

55.1

40.1

Minor 5ss

34.6

-1.8

3.1

44.1

43.8

Minor BPS

63.4

0.42

1.6

70.81

40.5

Associated Gene:

Gene:

DNAJC1

Ensembl Gene ID:

ENSAPLG00000016264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045984

18864658 - 18964348

99691

ENSAPLT00000016977

18864658 - 18964348

99691