About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18964091_18964279_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18964091 - 18964279
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAATA
Flanking Amino Acid:
FEERNYLLRKEECIARYKLL
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
68.1
0.57
1.7
81.86
32.7

Associated Gene:

Gene:
DNAJC1
Ensembl Gene ID:
ENSAPLG00000016264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045984
18864658 - 18964348
99691