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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18970532_18972514_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18970532 - 18972514
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTCTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCTCTTACAC
Flanking Amino Acid:
HGDNAAQKVTRLSDKTGPVA
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.9
0.67
0.8
76.1
31.5
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
59.4
0.27
1.7
72.75
38

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025763
18970362 - 19086842
116481
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000041215
18970487 - 19086842
116356