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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18980075_18980497_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18980075 - 18980497
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
ATAATTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTTTTGAAAT
Flanking Amino Acid:
HQVHAFPVQAAPSTDSLNSS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.6
0.37
1
63.3
43.2
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
61.9
0.45
1.5
78.61
37.2

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000041215
18970487 - 19086842
116356
ENSAPLT00000023469
18970487 - 19086842
116356