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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18980687_18982493_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18980687 - 18982493
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GTTTTTATCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATCT
Flanking Amino Acid:
FLLEQGTPSDILGMLKSLHQ
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
0.8
78.3
34.8
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
61.9
0.45
1.6
75.73
41.5

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025763
18970362 - 19086842
116481
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000041215
18970487 - 19086842
116356