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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18986936_18988281_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18986936 - 18988281
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTACACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AAATATTTACAC
Flanking Amino Acid:
LIAQTENSQADQDLGDNSRS
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.4
0.57
0.9
68
37.8
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
45.9
-0.3
1.8
53.3
37.5

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000041215
18970487 - 19086842
116356
ENSAPLT00000025763
18970362 - 19086842
116481