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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19026127_19027776_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19026127 - 19027776
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTTTGTATTT
Flanking Amino Acid:
TVTAASPFQQGSFLGTPSSI
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.5
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
93.1
0.97
0.6
92.3
18
Minor 5ss
44.2
-0.6
2.8
61
43.5
Minor BPS
48.4
-0
2.1
72.97
39.1

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025763
18970362 - 19086842
116481
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000041215
18970487 - 19086842
116356