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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19038564_19045934_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19038564 - 19045934
Intron Length:
7371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCTGCTATT
Flanking Amino Acid:
GYCKYHFSKLKFGLAHRRSE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
69.1
0.43
0.9
62.5
38.4
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
42.1
-0.5
2.4
67.32
44.1

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041215
18970487 - 19086842
116356