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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19048581_19054432_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19048581 - 19054432
Intron Length:
5852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTGGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTTTTATCA
Flanking Amino Acid:
QSVPHDRYNKTCYICDEQGR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
59.2
0.28
1.6
66.98
40

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000017029
18970487 - 19081786
111300
ENSAPLT00000041215
18970487 - 19086842
116356
ENSAPLT00000025763
18970362 - 19086842
116481