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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19086090_19086623_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19086090 - 19086623
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTGGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGGGGCTGACGG
Flanking Amino Acid:
GGDAEWQHAEMVSSEPLLLP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
66.7
0.38
0.9
58.7
38.3
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
32.7
-1.4
2.1
29
41.4

Associated Gene:

Gene:
MLLT10
Ensembl Gene ID:
ENSAPLG00000016316
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025763
18970362 - 19086842
116481
ENSAPLT00000023469
18970487 - 19086842
116356
ENSAPLT00000021143
18970487 - 19086842
116356
ENSAPLT00000045860
18970487 - 19086842
116356
ENSAPLT00000041215
18970487 - 19086842
116356