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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19120546_19121261_F

Intron Information:

Intron Rank:
125820
Intron Class:
major
Intron Phase:
Intron Coordinates:
19120546 - 19121261
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCCA
5'SS Class:
major
3'SS Sequence:
CTTAACATCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.1
39.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
65.6
0.35
0.9
59.1
36.4
Minor 5ss
25.7
-2.8
3
27.7
37.3
Minor BPS
75.9
0.81
1.2
79.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017787
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026039
19118985 - 19121598
2614