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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1912486_1912598_F

Intron Information:

Intron Rank:
131347
Intron Class:
major
Intron Phase:
Intron Coordinates:
1912486 - 1912598
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCAT
5'SS Class:
major
3'SS Sequence:
TCTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGGTCCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.6
41.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
83.2
0.75
0.8
77.3
31.5
Minor 5ss
25.6
-2.8
3.4
37.1
47.5
Minor BPS
66.1
0.58
1.6
79.5
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020558
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044181
1911898 - 1913262
1365