Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19126023_19146942_F

Intron Information:

Intron Rank:

139705

Intron Class:

major

Intron Phase:

Intron Coordinates:

19126023 - 19146942

Intron Length:

20920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTGATATTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.9

33.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

79.1

0.65

70.2

44.7

Minor 5ss

27.4

-2.6

2.7

31.6

42.2

Minor BPS

74.5

0.76

81.02

27.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048219

19125795 - 19148102

22308