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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_19182401_19183206_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19182401 - 19183206
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGGGG
5'SS Class:
weak_major
3'SS Sequence:
CATTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTACTTTACAT
Flanking Amino Acid:
PTEKVNCLDKYWHKGCFHCE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
45.9
44.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86
0.81
0.8
80
31.7
Minor 5ss
27.6
-2.6
3.6
37.8
47
Minor BPS
55.5
0.25
1.8
73.52
43.4

Associated Gene:

Gene:
NEBL
Ensembl Gene ID:
ENSAPLG00000005756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046719
19182332 - 19431805
249474
ENSAPLT00000034117
19182332 - 19431805
249474
ENSAPLT00000028833
19182332 - 19441130
258799
ENSAPLT00000047944
19182332 - 19447344
265013